Yersinia Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Yersinia_enterocolitica	3356	136	3220
Yersinia_pestis	2362	110	2252
Yersinia_ruckeri	110	7	103
Yersinia_intermedia	102	9	93

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Yersinia_pestis	N50	17000	nan
Yersinia_pestis	no_of_contigs	nan	540
Yersinia_pestis	GC_Content	47	48
Yersinia_pestis	Completeness	94	nan
Yersinia_pestis	Contamination	nan	2
Yersinia_pestis	Total_Coding_Sequences	3900	4600
Yersinia_pestis	Genome_Size	4.4e+06	5e+06
Yersinia_enterocolitica	N50	34000	nan
Yersinia_enterocolitica	no_of_contigs	nan	330
Yersinia_enterocolitica	GC_Content	46	48
Yersinia_enterocolitica	Completeness	91	nan
Yersinia_enterocolitica	Contamination	nan	5
Yersinia_enterocolitica	Total_Coding_Sequences	4000	5000
Yersinia_enterocolitica	Genome_Size	4.3e+06	5.2e+06
Yersinia_intermedia	N50	52000	nan
Yersinia_intermedia	no_of_contigs	nan	310
Yersinia_intermedia	GC_Content	47	48
Yersinia_intermedia	Completeness	98	nan
Yersinia_intermedia	Contamination	nan	3
Yersinia_intermedia	Total_Coding_Sequences	4100	5100

... and 8 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: