Xanthomonas Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Xanthomonas_euvesicatoria	929	50	879
Xanthomonas_campestris	677	32	645
Xanthomonas_cissicola	560	41	519
Xanthomonas_oryzae	328	19	309
Xanthomonas_hortorum	237	17	220
Xanthomonas_arboricola	124	3	121

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Xanthomonas_euvesicatoria	N50	52000	nan
Xanthomonas_euvesicatoria	no_of_contigs	nan	270
Xanthomonas_euvesicatoria	GC_Content	64	66
Xanthomonas_euvesicatoria	Completeness	96	nan
Xanthomonas_euvesicatoria	Contamination	nan	3
Xanthomonas_euvesicatoria	Total_Coding_Sequences	4100	4800
Xanthomonas_euvesicatoria	Genome_Size	4.9e+06	5.6e+06
Xanthomonas_arboricola	N50	53000	nan
Xanthomonas_arboricola	no_of_contigs	nan	230
Xanthomonas_arboricola	GC_Content	65	66
Xanthomonas_arboricola	Completeness	97	nan
Xanthomonas_arboricola	Contamination	nan	3
Xanthomonas_arboricola	Total_Coding_Sequences	3900	4700
Xanthomonas_arboricola	Genome_Size	4.7e+06	5.4e+06
Xanthomonas_hortorum	N50	16000	nan
Xanthomonas_hortorum	no_of_contigs	nan	800
Xanthomonas_hortorum	GC_Content	63	64
Xanthomonas_hortorum	Completeness	97	nan
Xanthomonas_hortorum	Contamination	nan	3
Xanthomonas_hortorum	Total_Coding_Sequences	4300	5200

... and 22 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: