Vibrio Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Vibrio_cholerae	13069	527	12542
Vibrio_parahaemolyticus	8309	203	8106
Vibrio_vulnificus	1365	28	1337
Vibrio_alginolyticus	545	16	529
Vibrio_fluvialis	289	9	280
Vibrio_mediterranei	217	14	203
Vibrio_metschnikovii	163	8	155
Vibrio_anguillarum	146	11	135
Vibrio_diabolicus	145	10	135

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Vibrio_metschnikovii	N50	74000	nan
Vibrio_metschnikovii	no_of_contigs	nan	460
Vibrio_metschnikovii	GC_Content	43	45
Vibrio_metschnikovii	Completeness	95	nan
Vibrio_metschnikovii	Contamination	nan	2
Vibrio_metschnikovii	Total_Coding_Sequences	3200	3800
Vibrio_metschnikovii	Genome_Size	3.6e+06	4.1e+06
Vibrio_alginolyticus	N50	68000	nan
Vibrio_alginolyticus	no_of_contigs	nan	220
Vibrio_alginolyticus	GC_Content	44	45
Vibrio_alginolyticus	Completeness	95	nan
Vibrio_alginolyticus	Contamination	nan	4
Vibrio_alginolyticus	Total_Coding_Sequences	4400	5300
Vibrio_alginolyticus	Genome_Size	4.8e+06	5.8e+06
Vibrio_vulnificus	N50	64000	nan
Vibrio_vulnificus	no_of_contigs	nan	310
Vibrio_vulnificus	GC_Content	45	47
Vibrio_vulnificus	Completeness	97	nan
Vibrio_vulnificus	Contamination	nan	6
Vibrio_vulnificus	Total_Coding_Sequences	4200	5800

... and 43 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: