Streptococcus Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Streptococcus_pneumoniae	121054	3349	117705
Streptococcus_pyogenes	45861	1751	44110
Streptococcus_agalactiae	37375	1109	36266
Streptococcus_suis	5462	120	5342
Streptococcus_equi	1990	77	1913
Streptococcus_dysgalactiae	1603	64	1539
Streptococcus_uberis	1534	110	1424
Streptococcus_pseudopneumoniae	863	38	825
Streptococcus_mutans	440	15	425
Streptococcus_mitis	400	18	382
Streptococcus_oralis	286	12	274
Streptococcus_anginosus	232	9	223
Streptococcus_salivarius	181	5	176
Streptococcus_parasanguinis	134	9	125
Streptococcus_canis	132	16	116
Streptococcus_gordonii	102	10	92

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Streptococcus_agalactiae	N50	36000	nan
Streptococcus_agalactiae	no_of_contigs	nan	140
Streptococcus_agalactiae	GC_Content	35	37
Streptococcus_agalactiae	Completeness	95	nan
Streptococcus_agalactiae	Contamination	nan	3
Streptococcus_agalactiae	Total_Coding_Sequences	1900	2400
Streptococcus_agalactiae	Genome_Size	1.9e+06	2.4e+06
Streptococcus_equi	N50	24000	nan
Streptococcus_equi	no_of_contigs	nan	210
Streptococcus_equi	GC_Content	40	42
Streptococcus_equi	Completeness	97	nan
Streptococcus_equi	Contamination	nan	2
Streptococcus_equi	Total_Coding_Sequences	1800	2300
Streptococcus_equi	Genome_Size	1.9e+06	2.3e+06
Streptococcus_suis	N50	20000	nan
Streptococcus_suis	no_of_contigs	nan	290
Streptococcus_suis	GC_Content	39	44
Streptococcus_suis	Completeness	93	nan
Streptococcus_suis	Contamination	nan	5
Streptococcus_suis	Total_Coding_Sequences	1800	2700

... and 92 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: