Stenotrophomonas Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Stenotrophomonas_maltophilia	1904	78	1826
Stenotrophomonas_sepilia	137	10	127
Stenotrophomonas_geniculata	134	6	128
Stenotrophomonas_pavanii	118	4	114

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Stenotrophomonas_sepilia	N50	45000	nan
Stenotrophomonas_sepilia	no_of_contigs	nan	200
Stenotrophomonas_sepilia	GC_Content	66	67
Stenotrophomonas_sepilia	Completeness	100	nan
Stenotrophomonas_sepilia	Contamination	nan	2
Stenotrophomonas_sepilia	Total_Coding_Sequences	3800	4400
Stenotrophomonas_sepilia	Genome_Size	4.2e+06	4.8e+06
Stenotrophomonas_pavanii	N50	36000	nan
Stenotrophomonas_pavanii	no_of_contigs	nan	250
Stenotrophomonas_pavanii	GC_Content	66	68
Stenotrophomonas_pavanii	Completeness	98	nan
Stenotrophomonas_pavanii	Contamination	nan	2
Stenotrophomonas_pavanii	Total_Coding_Sequences	3800	4600
Stenotrophomonas_pavanii	Genome_Size	4.3e+06	4.9e+06
Stenotrophomonas_geniculata	N50	31000	nan
Stenotrophomonas_geniculata	no_of_contigs	nan	260
Stenotrophomonas_geniculata	GC_Content	65	67
Stenotrophomonas_geniculata	Completeness	99	nan
Stenotrophomonas_geniculata	Contamination	nan	3
Stenotrophomonas_geniculata	Total_Coding_Sequences	3900	5000

... and 8 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: