Staphylococcus Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Staphylococcus_aureus	121428	4269	117159
Staphylococcus_epidermidis	6411	250	6161
Staphylococcus_pseudintermedius	5492	226	5266
Staphylococcus_haemolyticus	1674	99	1575
Staphylococcus_capitis	1612	67	1545
Staphylococcus_saprophyticus	1193	58	1135
Staphylococcus_argenteus	673	45	628
Staphylococcus_hominis	388	28	360
Staphylococcus_simulans	337	11	326
Staphylococcus_chromogenes	331	12	319
Staphylococcus_xylosus	305	16	289
Staphylococcus_warneri	183	11	172
Staphylococcus_lugdunensis	137	7	130
Staphylococcus_equorum	127	8	119
Staphylococcus_coagulans	103	9	94

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Staphylococcus_pseudintermedius	N50	32000	nan
Staphylococcus_pseudintermedius	no_of_contigs	nan	220
Staphylococcus_pseudintermedius	GC_Content	37	38
Staphylococcus_pseudintermedius	Completeness	91	nan
Staphylococcus_pseudintermedius	Contamination	nan	5
Staphylococcus_pseudintermedius	Total_Coding_Sequences	2200	2900
Staphylococcus_pseudintermedius	Genome_Size	2.4e+06	2.9e+06
Staphylococcus_lugdunensis	N50	83000	nan
Staphylococcus_lugdunensis	no_of_contigs	nan	80
Staphylococcus_lugdunensis	GC_Content	33	34
Staphylococcus_lugdunensis	Completeness	95	nan
Staphylococcus_lugdunensis	Contamination	nan	3
Staphylococcus_lugdunensis	Total_Coding_Sequences	2300	2800
Staphylococcus_lugdunensis	Genome_Size	2.4e+06	2.9e+06
Staphylococcus_coagulans	N50	71000	nan
Staphylococcus_coagulans	no_of_contigs	nan	120
Staphylococcus_coagulans	GC_Content	36	36
Staphylococcus_coagulans	Completeness	99	nan
Staphylococcus_coagulans	Contamination	nan	1
Staphylococcus_coagulans	Total_Coding_Sequences	2000	2500

... and 85 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: