Sinorhizobium Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Sinorhizobium_meliloti	546	20	526
Sinorhizobium_medicae	196	10	186

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Sinorhizobium_meliloti	N50	34000	nan
Sinorhizobium_meliloti	no_of_contigs	nan	510
Sinorhizobium_meliloti	GC_Content	61	63
Sinorhizobium_meliloti	Completeness	96	nan
Sinorhizobium_meliloti	Contamination	nan	3
Sinorhizobium_meliloti	Total_Coding_Sequences	5800	7600
Sinorhizobium_meliloti	Genome_Size	6.1e+06	7.7e+06
Sinorhizobium_medicae	N50	31000	nan
Sinorhizobium_medicae	no_of_contigs	nan	490
Sinorhizobium_medicae	GC_Content	60	62
Sinorhizobium_medicae	Completeness	87	nan
Sinorhizobium_medicae	Contamination	nan	6
Sinorhizobium_medicae	Total_Coding_Sequences	6100	7700
Sinorhizobium_medicae	Genome_Size	6.4e+06	7.8e+06

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: