Serratia Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Serratia_marcescens	1431	49	1382
Serratia_nevei	957	41	916
Serratia_ureilytica	455	22	433
Serratia_bockelmannii	300	19	281
Serratia_nematodiphila	294	24	270
Serratia_liquefaciens	101	5	96

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Serratia_ureilytica	N50	59000	nan
Serratia_ureilytica	no_of_contigs	nan	190
Serratia_ureilytica	GC_Content	59	60
Serratia_ureilytica	Completeness	96	nan
Serratia_ureilytica	Contamination	nan	2
Serratia_ureilytica	Total_Coding_Sequences	4500	5300
Serratia_ureilytica	Genome_Size	4.6e+06	5.5e+06
Serratia_nematodiphila	N50	20000	nan
Serratia_nematodiphila	no_of_contigs	nan	580
Serratia_nematodiphila	GC_Content	59	60
Serratia_nematodiphila	Completeness	96	nan
Serratia_nematodiphila	Contamination	nan	1
Serratia_nematodiphila	Total_Coding_Sequences	4600	5400
Serratia_nematodiphila	Genome_Size	4.9e+06	5.4e+06
Serratia_nevei	N50	48000	nan
Serratia_nevei	no_of_contigs	nan	420
Serratia_nevei	GC_Content	58	61
Serratia_nevei	Completeness	99	nan
Serratia_nevei	Contamination	nan	3
Serratia_nevei	Total_Coding_Sequences	4500	5900

... and 22 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: