Pseudomonas Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Pseudomonas_aeruginosa	43394	1459	41935
Pseudomonas_marginalis	1077	51	1026
Pseudomonas_alloputida	697	41	656
Pseudomonas_avellanae	453	17	436
Pseudomonas_paracarnis	442	30	412
Pseudomonas_glycinae	206	13	193
Pseudomonas_syringae	200	17	183
Pseudomonas_protegens	199	14	185
Pseudomonas_asiatica	198	12	186
Pseudomonas_putida	169	10	159
Pseudomonas_monteilii	129	9	120
Pseudomonas_fulva	117	9	108
Pseudomonas_fluorescens	108	7	101
Pseudomonas_juntendi	103	11	92

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Pseudomonas_juntendi	N50	45000	nan
Pseudomonas_juntendi	no_of_contigs	nan	360
Pseudomonas_juntendi	GC_Content	61	63
Pseudomonas_juntendi	Completeness	99	nan
Pseudomonas_juntendi	Contamination	nan	2
Pseudomonas_juntendi	Total_Coding_Sequences	4900	5900
Pseudomonas_juntendi	Genome_Size	5.3e+06	6.2e+06
Pseudomonas_paracarnis	N50	54000	nan
Pseudomonas_paracarnis	no_of_contigs	nan	260
Pseudomonas_paracarnis	GC_Content	59	61
Pseudomonas_paracarnis	Completeness	99	nan
Pseudomonas_paracarnis	Contamination	nan	1
Pseudomonas_paracarnis	Total_Coding_Sequences	5200	6100
Pseudomonas_paracarnis	Genome_Size	5.8e+06	6.6e+06
Pseudomonas_fulva	N50	122000	nan
Pseudomonas_fulva	no_of_contigs	nan	210
Pseudomonas_fulva	GC_Content	60	65
Pseudomonas_fulva	Completeness	95	nan
Pseudomonas_fulva	Contamination	nan	10
Pseudomonas_fulva	Total_Coding_Sequences	4200	5500

... and 78 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: