Providencia Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Providencia_rettgeri	387	21	366
Providencia_stuartii	280	8	272

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Providencia_stuartii	N50	21000	nan
Providencia_stuartii	no_of_contigs	nan	460
Providencia_stuartii	GC_Content	41	42
Providencia_stuartii	Completeness	87	nan
Providencia_stuartii	Contamination	nan	10
Providencia_stuartii	Total_Coding_Sequences	3800	4700
Providencia_stuartii	Genome_Size	4.1e+06	4.9e+06
Providencia_rettgeri	N50	14000	nan
Providencia_rettgeri	no_of_contigs	nan	600
Providencia_rettgeri	GC_Content	40	44
Providencia_rettgeri	Completeness	95	nan
Providencia_rettgeri	Contamination	nan	6
Providencia_rettgeri	Total_Coding_Sequences	3700	4900
Providencia_rettgeri	Genome_Size	4e+06	5.1e+06

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: