Phocaeicola Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Phocaeicola_vulgatus	761	50	711
Phocaeicola_dorei	336	31	305

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Phocaeicola_dorei	N50	30000	nan
Phocaeicola_dorei	no_of_contigs	nan	510
Phocaeicola_dorei	GC_Content	41	43
Phocaeicola_dorei	Completeness	98	nan
Phocaeicola_dorei	Contamination	nan	5
Phocaeicola_dorei	Total_Coding_Sequences	3900	5400
Phocaeicola_dorei	Genome_Size	4.9e+06	6.1e+06
Phocaeicola_vulgatus	N50	30000	nan
Phocaeicola_vulgatus	no_of_contigs	nan	590
Phocaeicola_vulgatus	GC_Content	41	43
Phocaeicola_vulgatus	Completeness	97	nan
Phocaeicola_vulgatus	Contamination	nan	3
Phocaeicola_vulgatus	Total_Coding_Sequences	3800	5400
Phocaeicola_vulgatus	Genome_Size	4.5e+06	5.8e+06

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: