Pediococcus Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Pediococcus_acidilactici	153	9	144
Pediococcus_pentosaceus	140	10	130

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Pediococcus_acidilactici	N50	125000	nan
Pediococcus_acidilactici	no_of_contigs	nan	60
Pediococcus_acidilactici	GC_Content	41	43
Pediococcus_acidilactici	Completeness	90	nan
Pediococcus_acidilactici	Contamination	nan	7
Pediococcus_acidilactici	Total_Coding_Sequences	1700	2300
Pediococcus_acidilactici	Genome_Size	1.7e+06	2.3e+06
Pediococcus_pentosaceus	N50	209000	nan
Pediococcus_pentosaceus	no_of_contigs	nan	50
Pediococcus_pentosaceus	GC_Content	37	38
Pediococcus_pentosaceus	Completeness	84	nan
Pediococcus_pentosaceus	Contamination	nan	9
Pediococcus_pentosaceus	Total_Coding_Sequences	1600	2200
Pediococcus_pentosaceus	Genome_Size	1.6e+06	2.1e+06

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: