Parabacteroides Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Parabacteroides_distasonis	2109	137	1972
Parabacteroides_merdae	447	25	422
Parabacteroides_goldsteinii	123	11	112

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Parabacteroides_merdae	N50	42000	nan
Parabacteroides_merdae	no_of_contigs	nan	320
Parabacteroides_merdae	GC_Content	44	46
Parabacteroides_merdae	Completeness	94	nan
Parabacteroides_merdae	Contamination	nan	7
Parabacteroides_merdae	Total_Coding_Sequences	3500	4800
Parabacteroides_merdae	Genome_Size	4.2e+06	5.3e+06
Parabacteroides_goldsteinii	N50	35000	nan
Parabacteroides_goldsteinii	no_of_contigs	nan	610
Parabacteroides_goldsteinii	GC_Content	43	44
Parabacteroides_goldsteinii	Completeness	96	nan
Parabacteroides_goldsteinii	Contamination	nan	5
Parabacteroides_goldsteinii	Total_Coding_Sequences	5000	6300
Parabacteroides_goldsteinii	Genome_Size	6.3e+06	7.6e+06
Parabacteroides_distasonis	N50	28000	nan
Parabacteroides_distasonis	no_of_contigs	nan	410
Parabacteroides_distasonis	GC_Content	44	46
Parabacteroides_distasonis	Completeness	91	nan
Parabacteroides_distasonis	Contamination	nan	5
Parabacteroides_distasonis	Total_Coding_Sequences	3900	5000

... and 1 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: