Neisseria Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Neisseria_gonorrhoeae	57364	1905	55459
Neisseria_meningitidis	35852	1499	34353
Neisseria_lactamica	1424	40	1384
Neisseria_bergeri	132	7	125
Neisseria_flavescens	128	8	120
Neisseria_polysaccharea	115	8	107
Neisseria_perflava	105	4	101

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Neisseria_polysaccharea	N50	76000	nan
Neisseria_polysaccharea	no_of_contigs	nan	80
Neisseria_polysaccharea	GC_Content	51	53
Neisseria_polysaccharea	Completeness	98	nan
Neisseria_polysaccharea	Contamination	nan	1
Neisseria_polysaccharea	Total_Coding_Sequences	1800	2200
Neisseria_polysaccharea	Genome_Size	1.9e+06	2.2e+06
Neisseria_perflava	N50	137000	nan
Neisseria_perflava	no_of_contigs	nan	70
Neisseria_perflava	GC_Content	48	50
Neisseria_perflava	Completeness	99	nan
Neisseria_perflava	Contamination	nan	2
Neisseria_perflava	Total_Coding_Sequences	2000	2400
Neisseria_perflava	Genome_Size	2.1e+06	2.5e+06
Neisseria_bergeri	N50	97000	nan
Neisseria_bergeri	no_of_contigs	nan	100
Neisseria_bergeri	GC_Content	52	52
Neisseria_bergeri	Completeness	99	nan
Neisseria_bergeri	Contamination	nan	1
Neisseria_bergeri	Total_Coding_Sequences	1800	2200

... and 29 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: