Mycobacterium Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Mycobacterium_tuberculosis	180095	8811	171284
Mycobacterium_abscessus	5906	247	5659
Mycobacterium_avium	3494	208	3286
Mycobacterium_intracellulare	2150	99	2051
Mycobacterium_marinum	1170	36	1134
Mycobacterium_kansasii	727	45	682
Mycobacterium_smegmatis	442	36	406
Mycobacterium_chelonae	195	10	185

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Mycobacterium_avium	N50	14000	nan
Mycobacterium_avium	no_of_contigs	nan	620
Mycobacterium_avium	GC_Content	68	70
Mycobacterium_avium	Completeness	93	nan
Mycobacterium_avium	Contamination	nan	7
Mycobacterium_avium	Total_Coding_Sequences	4500	5700
Mycobacterium_avium	Genome_Size	4.7e+06	5.9e+06
Mycobacterium_kansasii	N50	29000	nan
Mycobacterium_kansasii	no_of_contigs	nan	490
Mycobacterium_kansasii	GC_Content	65	67
Mycobacterium_kansasii	Completeness	99	nan
Mycobacterium_kansasii	Contamination	nan	2
Mycobacterium_kansasii	Total_Coding_Sequences	5600	6300
Mycobacterium_kansasii	Genome_Size	6.3e+06	6.9e+06
Mycobacterium_intracellulare	N50	35000	nan
Mycobacterium_intracellulare	no_of_contigs	nan	430
Mycobacterium_intracellulare	GC_Content	67	69
Mycobacterium_intracellulare	Completeness	94	nan
Mycobacterium_intracellulare	Contamination	nan	13
Mycobacterium_intracellulare	Total_Coding_Sequences	4900	7100

... and 36 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: