Listeria Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Listeria_monocytogenes	66720	2606	64114
Listeria_innocua	1770	95	1675
Listeria_welshimeri	379	17	362
Listeria_seeligeri	277	9	268
Listeria_grayi	126	12	114

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Listeria_grayi	N50	144000	nan
Listeria_grayi	no_of_contigs	nan	90
Listeria_grayi	GC_Content	41	42
Listeria_grayi	Completeness	83	nan
Listeria_grayi	Contamination	nan	7
Listeria_grayi	Total_Coding_Sequences	2500	2900
Listeria_grayi	Genome_Size	2.5e+06	2.9e+06
Listeria_welshimeri	N50	79000	nan
Listeria_welshimeri	no_of_contigs	nan	110
Listeria_welshimeri	GC_Content	36	37
Listeria_welshimeri	Completeness	99	nan
Listeria_welshimeri	Contamination	nan	3
Listeria_welshimeri	Total_Coding_Sequences	2600	3100
Listeria_welshimeri	Genome_Size	2.6e+06	3e+06
Listeria_innocua	N50	48000	nan
Listeria_innocua	no_of_contigs	nan	180
Listeria_innocua	GC_Content	37	38
Listeria_innocua	Completeness	95	nan
Listeria_innocua	Contamination	nan	2
Listeria_innocua	Total_Coding_Sequences	2700	3300

... and 15 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: