Limosilactobacillus Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Limosilactobacillus_fermentum	475	16	459
Limosilactobacillus_reuteri	268	2	266
Limosilactobacillus_mucosae	110	8	102

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Limosilactobacillus_reuteri	N50	15000	nan
Limosilactobacillus_reuteri	no_of_contigs	nan	380
Limosilactobacillus_reuteri	GC_Content	38	40
Limosilactobacillus_reuteri	Completeness	91	nan
Limosilactobacillus_reuteri	Contamination	nan	5
Limosilactobacillus_reuteri	Total_Coding_Sequences	1700	2800
Limosilactobacillus_reuteri	Genome_Size	1.8e+06	2.7e+06
Limosilactobacillus_fermentum	N50	25000	nan
Limosilactobacillus_fermentum	no_of_contigs	nan	360
Limosilactobacillus_fermentum	GC_Content	50	53
Limosilactobacillus_fermentum	Completeness	85	nan
Limosilactobacillus_fermentum	Contamination	nan	11
Limosilactobacillus_fermentum	Total_Coding_Sequences	1900	2500
Limosilactobacillus_fermentum	Genome_Size	1.8e+06	2.4e+06
Limosilactobacillus_mucosae	N50	70000	nan
Limosilactobacillus_mucosae	no_of_contigs	nan	110
Limosilactobacillus_mucosae	GC_Content	46	47
Limosilactobacillus_mucosae	Completeness	97	nan
Limosilactobacillus_mucosae	Contamination	nan	1
Limosilactobacillus_mucosae	Total_Coding_Sequences	1700	2400

... and 1 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: