Leptospira Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Leptospira_interrogans	666	33	633
Leptospira_borgpetersenii	175	15	160

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Leptospira_borgpetersenii	N50	32000	nan
Leptospira_borgpetersenii	no_of_contigs	nan	400
Leptospira_borgpetersenii	GC_Content	40	41
Leptospira_borgpetersenii	Completeness	69	nan
Leptospira_borgpetersenii	Contamination	nan	9
Leptospira_borgpetersenii	Total_Coding_Sequences	3300	3700
Leptospira_borgpetersenii	Genome_Size	3.7e+06	4.1e+06
Leptospira_interrogans	N50	11000	nan
Leptospira_interrogans	no_of_contigs	nan	850
Leptospira_interrogans	GC_Content	34	36
Leptospira_interrogans	Completeness	73	nan
Leptospira_interrogans	Contamination	nan	13
Leptospira_interrogans	Total_Coding_Sequences	3600	4800
Leptospira_interrogans	Genome_Size	4.3e+06	5.6e+06

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: