Legionella Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Legionella_pneumophila	7043	284	6759
Legionella_longbeachae	189	11	178

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Legionella_pneumophila	N50	48000	nan
Legionella_pneumophila	no_of_contigs	nan	230
Legionella_pneumophila	GC_Content	38	39
Legionella_pneumophila	Completeness	95	nan
Legionella_pneumophila	Contamination	nan	3
Legionella_pneumophila	Total_Coding_Sequences	2800	3500
Legionella_pneumophila	Genome_Size	3.2e+06	3.8e+06
Legionella_longbeachae	N50	32000	nan
Legionella_longbeachae	no_of_contigs	nan	260
Legionella_longbeachae	GC_Content	37	38
Legionella_longbeachae	Completeness	95	nan
Legionella_longbeachae	Contamination	nan	8
Legionella_longbeachae	Total_Coding_Sequences	3400	3900
Legionella_longbeachae	Genome_Size	3.9e+06	4.4e+06

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: