Lactobacillus Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Lactobacillus_paragasseri	305	22	283
Lactobacillus_johnsonii	228	7	221
Lactobacillus_acidophilus	146	5	141
Lactobacillus_gasseri	132	9	123
Lactobacillus_crispatus	123	11	112

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Lactobacillus_paragasseri	N50	41000	nan
Lactobacillus_paragasseri	no_of_contigs	nan	160
Lactobacillus_paragasseri	GC_Content	34	36
Lactobacillus_paragasseri	Completeness	97	nan
Lactobacillus_paragasseri	Contamination	nan	1
Lactobacillus_paragasseri	Total_Coding_Sequences	1700	2200
Lactobacillus_paragasseri	Genome_Size	1.8e+06	2.2e+06
Lactobacillus_johnsonii	N50	31000	nan
Lactobacillus_johnsonii	no_of_contigs	nan	160
Lactobacillus_johnsonii	GC_Content	34	36
Lactobacillus_johnsonii	Completeness	90	nan
Lactobacillus_johnsonii	Contamination	nan	6
Lactobacillus_johnsonii	Total_Coding_Sequences	1700	2300
Lactobacillus_johnsonii	Genome_Size	1.7e+06	2.3e+06
Lactobacillus_acidophilus	N50	115000	nan
Lactobacillus_acidophilus	no_of_contigs	nan	60
Lactobacillus_acidophilus	GC_Content	34	35
Lactobacillus_acidophilus	Completeness	92	nan
Lactobacillus_acidophilus	Contamination	nan	2
Lactobacillus_acidophilus	Total_Coding_Sequences	1800	2100

... and 15 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: