Lacticaseibacillus Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Lacticaseibacillus_paracasei	671	28	643
Lacticaseibacillus_rhamnosus	649	28	621

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Lacticaseibacillus_paracasei	N50	29000	nan
Lacticaseibacillus_paracasei	no_of_contigs	nan	320
Lacticaseibacillus_paracasei	GC_Content	46	47
Lacticaseibacillus_paracasei	Completeness	85	nan
Lacticaseibacillus_paracasei	Contamination	nan	14
Lacticaseibacillus_paracasei	Total_Coding_Sequences	2500	3400
Lacticaseibacillus_paracasei	Genome_Size	2.6e+06	3.5e+06
Lacticaseibacillus_rhamnosus	N50	50000	nan
Lacticaseibacillus_rhamnosus	no_of_contigs	nan	190
Lacticaseibacillus_rhamnosus	GC_Content	46	47
Lacticaseibacillus_rhamnosus	Completeness	96	nan
Lacticaseibacillus_rhamnosus	Contamination	nan	3
Lacticaseibacillus_rhamnosus	Total_Coding_Sequences	2600	3100
Lacticaseibacillus_rhamnosus	Genome_Size	2.8e+06	3.3e+06

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: