Klebsiella Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Klebsiella_pneumoniae	72964	2230	70734
Klebsiella_quasipneumoniae	3657	120	3537
Klebsiella_variicola	2995	120	2875
Klebsiella_michiganensis	1884	79	1805
Klebsiella_aerogenes	1619	66	1553
Klebsiella_oxytoca	1177	46	1131
Klebsiella_ornithinolytica	656	31	625
Klebsiella_grimontii	649	29	620
Klebsiella_planticola	307	13	294

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Klebsiella_ornithinolytica	N50	83000	nan
Klebsiella_ornithinolytica	no_of_contigs	nan	350
Klebsiella_ornithinolytica	GC_Content	54	58
Klebsiella_ornithinolytica	Completeness	96	nan
Klebsiella_ornithinolytica	Contamination	nan	4
Klebsiella_ornithinolytica	Total_Coding_Sequences	4800	6300
Klebsiella_ornithinolytica	Genome_Size	5.3e+06	6.6e+06
Klebsiella_variicola	N50	67000	nan
Klebsiella_variicola	no_of_contigs	nan	350
Klebsiella_variicola	GC_Content	56	58
Klebsiella_variicola	Completeness	98	nan
Klebsiella_variicola	Contamination	nan	3
Klebsiella_variicola	Total_Coding_Sequences	4900	6500
Klebsiella_variicola	Genome_Size	5.2e+06	6.5e+06
Klebsiella_pneumoniae	N50	54000	nan
Klebsiella_pneumoniae	no_of_contigs	nan	390
Klebsiella_pneumoniae	GC_Content	56	59
Klebsiella_pneumoniae	Completeness	95	nan
Klebsiella_pneumoniae	Contamination	nan	5
Klebsiella_pneumoniae	Total_Coding_Sequences	4700	6500

... and 43 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: