Haemophilus Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Haemophilus_influenzae	12553	522	12031
Haemophilus_haemolyticus	158	11	147
Haemophilus_parainfluenzae	157	9	148

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Haemophilus_influenzae	N50	28000	nan
Haemophilus_influenzae	no_of_contigs	nan	140
Haemophilus_influenzae	GC_Content	37	39
Haemophilus_influenzae	Completeness	93	nan
Haemophilus_influenzae	Contamination	nan	3
Haemophilus_influenzae	Total_Coding_Sequences	1600	2200
Haemophilus_influenzae	Genome_Size	1.7e+06	2.2e+06
Haemophilus_haemolyticus	N50	46000	nan
Haemophilus_haemolyticus	no_of_contigs	nan	110
Haemophilus_haemolyticus	GC_Content	38	39
Haemophilus_haemolyticus	Completeness	94	nan
Haemophilus_haemolyticus	Contamination	nan	2
Haemophilus_haemolyticus	Total_Coding_Sequences	1700	2000
Haemophilus_haemolyticus	Genome_Size	1.8e+06	2.1e+06
Haemophilus_parainfluenzae	N50	11000	nan
Haemophilus_parainfluenzae	no_of_contigs	nan	330
Haemophilus_parainfluenzae	GC_Content	39	40
Haemophilus_parainfluenzae	Completeness	98	nan
Haemophilus_parainfluenzae	Contamination	nan	2
Haemophilus_parainfluenzae	Total_Coding_Sequences	1700	2300

... and 1 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: