Escherichia Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Escherichia_coli	399884	11441	388443
Escherichia_albertii	693	26	667
Escherichia_marmotae	524	31	493
Escherichia_fergusonii	241	11	230
Escherichia_ruysiae	130	10	120

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Escherichia_ruysiae	N50	60000	nan
Escherichia_ruysiae	no_of_contigs	nan	240
Escherichia_ruysiae	GC_Content	50	51
Escherichia_ruysiae	Completeness	99	nan
Escherichia_ruysiae	Contamination	nan	2
Escherichia_ruysiae	Total_Coding_Sequences	4000	5000
Escherichia_ruysiae	Genome_Size	4.3e+06	5.1e+06
Escherichia_marmotae	N50	54000	nan
Escherichia_marmotae	no_of_contigs	nan	460
Escherichia_marmotae	GC_Content	50	51
Escherichia_marmotae	Completeness	98	nan
Escherichia_marmotae	Contamination	nan	2
Escherichia_marmotae	Total_Coding_Sequences	4000	5200
Escherichia_marmotae	Genome_Size	4.4e+06	5.3e+06
Escherichia_fergusonii	N50	70000	nan
Escherichia_fergusonii	no_of_contigs	nan	210
Escherichia_fergusonii	GC_Content	49	51
Escherichia_fergusonii	Completeness	89	nan
Escherichia_fergusonii	Contamination	nan	9
Escherichia_fergusonii	Total_Coding_Sequences	4000	5200

... and 15 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: