Enterococcus Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Enterococcus_faecium	36574	1084	35490
Enterococcus_faecalis	9673	254	9419
Enterococcus_lactis	1293	49	1244
Enterococcus_hirae	995	38	957
Enterococcus_gallinarum	305	12	293
Enterococcus_durans	289	8	281
Enterococcus_cecorum	264	12	252
Enterococcus_casseliflavus	118	4	114
Enterococcus_avium	108	4	104

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Enterococcus_gallinarum	N50	76000	nan
Enterococcus_gallinarum	no_of_contigs	nan	180
Enterococcus_gallinarum	GC_Content	39	41
Enterococcus_gallinarum	Completeness	90	nan
Enterococcus_gallinarum	Contamination	nan	12
Enterococcus_gallinarum	Total_Coding_Sequences	2900	3800
Enterococcus_gallinarum	Genome_Size	3.1e+06	3.8e+06
Enterococcus_hirae	N50	38000	nan
Enterococcus_hirae	no_of_contigs	nan	210
Enterococcus_hirae	GC_Content	36	38
Enterococcus_hirae	Completeness	92	nan
Enterococcus_hirae	Contamination	nan	2
Enterococcus_hirae	Total_Coding_Sequences	2400	3200
Enterococcus_hirae	Genome_Size	2.6e+06	3.3e+06
Enterococcus_faecalis	N50	46000	nan
Enterococcus_faecalis	no_of_contigs	nan	230
Enterococcus_faecalis	GC_Content	36	38
Enterococcus_faecalis	Completeness	96	nan
Enterococcus_faecalis	Contamination	nan	3
Enterococcus_faecalis	Total_Coding_Sequences	2400	3600

... and 43 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: