Cronobacter Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Cronobacter_sakazakii	1717	29	1688
Cronobacter_turicensis	118	4	114

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Cronobacter_sakazakii	N50	92000	nan
Cronobacter_sakazakii	no_of_contigs	nan	140
Cronobacter_sakazakii	GC_Content	56	58
Cronobacter_sakazakii	Completeness	96	nan
Cronobacter_sakazakii	Contamination	nan	4
Cronobacter_sakazakii	Total_Coding_Sequences	3900	4800
Cronobacter_sakazakii	Genome_Size	4.2e+06	5e+06
Cronobacter_turicensis	N50	194000	nan
Cronobacter_turicensis	no_of_contigs	nan	110
Cronobacter_turicensis	GC_Content	56	58
Cronobacter_turicensis	Completeness	98	nan
Cronobacter_turicensis	Contamination	nan	2
Cronobacter_turicensis	Total_Coding_Sequences	3900	4500
Cronobacter_turicensis	Genome_Size	4.3e+06	4.9e+06

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: