Corynebacterium Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Corynebacterium_diphtheriae	1978	97	1881
Corynebacterium_striatum	400	24	376
Corynebacterium_glutamicum	306	5	301
Corynebacterium_ulcerans	161	13	148
Corynebacterium_jeikeium	135	8	127
Corynebacterium_pseudodiphtheriticum	110	9	101

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Corynebacterium_jeikeium	N50	77000	nan
Corynebacterium_jeikeium	no_of_contigs	nan	130
Corynebacterium_jeikeium	GC_Content	61	63
Corynebacterium_jeikeium	Completeness	95	nan
Corynebacterium_jeikeium	Contamination	nan	3
Corynebacterium_jeikeium	Total_Coding_Sequences	1900	2300
Corynebacterium_jeikeium	Genome_Size	2.2e+06	2.6e+06
Corynebacterium_striatum	N50	51000	nan
Corynebacterium_striatum	no_of_contigs	nan	290
Corynebacterium_striatum	GC_Content	58	60
Corynebacterium_striatum	Completeness	98	nan
Corynebacterium_striatum	Contamination	nan	3
Corynebacterium_striatum	Total_Coding_Sequences	2400	3200
Corynebacterium_striatum	Genome_Size	2.6e+06	3.1e+06
Corynebacterium_glutamicum	N50	102000	nan
Corynebacterium_glutamicum	no_of_contigs	nan	100
Corynebacterium_glutamicum	GC_Content	53	55
Corynebacterium_glutamicum	Completeness	91	nan
Corynebacterium_glutamicum	Contamination	nan	4
Corynebacterium_glutamicum	Total_Coding_Sequences	2600	3300

... and 22 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: