Citrobacter Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Citrobacter_freundii	2203	67	2136
Citrobacter_portucalensis	437	19	418
Citrobacter_braakii	351	13	338
Citrobacter_rodentium	350	66	284
Citrobacter_koseri	322	17	305
Citrobacter_werkmanii	264	12	252
Citrobacter_amalonaticus	219	7	212
Citrobacter_youngae	160	6	154
Citrobacter_farmeri	138	5	133
Citrobacter_sedlakii	120	13	107

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Citrobacter_koseri	N50	80000	nan
Citrobacter_koseri	no_of_contigs	nan	180
Citrobacter_koseri	GC_Content	53	54
Citrobacter_koseri	Completeness	98	nan
Citrobacter_koseri	Contamination	nan	2
Citrobacter_koseri	Total_Coding_Sequences	4100	5200
Citrobacter_koseri	Genome_Size	4.5e+06	5.3e+06
Citrobacter_farmeri	N50	54000	nan
Citrobacter_farmeri	no_of_contigs	nan	290
Citrobacter_farmeri	GC_Content	52	54
Citrobacter_farmeri	Completeness	98	nan
Citrobacter_farmeri	Contamination	nan	6
Citrobacter_farmeri	Total_Coding_Sequences	4500	5900
Citrobacter_farmeri	Genome_Size	4.9e+06	6e+06
Citrobacter_braakii	N50	77000	nan
Citrobacter_braakii	no_of_contigs	nan	280
Citrobacter_braakii	GC_Content	51	53
Citrobacter_braakii	Completeness	97	nan
Citrobacter_braakii	Contamination	nan	6
Citrobacter_braakii	Total_Coding_Sequences	4400	6200

... and 50 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: