Campylobacter Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Campylobacter_jejuni	94890	3463	91427
Campylobacter_coli	35173	1220	33953
Campylobacter_upsaliensis	860	53	807
Campylobacter_lari	634	27	607
Campylobacter_fetus	574	30	544
Campylobacter_hyointestinalis	128	11	117

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Campylobacter_coli	N50	25000	nan
Campylobacter_coli	no_of_contigs	nan	180
Campylobacter_coli	GC_Content	30	32
Campylobacter_coli	Completeness	94	nan
Campylobacter_coli	Contamination	nan	13
Campylobacter_coli	Total_Coding_Sequences	1600	2300
Campylobacter_coli	Genome_Size	1.6e+06	2.2e+06
Campylobacter_jejuni	N50	22000	nan
Campylobacter_jejuni	no_of_contigs	nan	160
Campylobacter_jejuni	GC_Content	30	31
Campylobacter_jejuni	Completeness	95	nan
Campylobacter_jejuni	Contamination	nan	10
Campylobacter_jejuni	Total_Coding_Sequences	1600	2200
Campylobacter_jejuni	Genome_Size	1.5e+06	2e+06
Campylobacter_upsaliensis	N50	27000	nan
Campylobacter_upsaliensis	no_of_contigs	nan	170
Campylobacter_upsaliensis	GC_Content	34	36
Campylobacter_upsaliensis	Completeness	98	nan
Campylobacter_upsaliensis	Contamination	nan	1
Campylobacter_upsaliensis	Total_Coding_Sequences	1600	2000

... and 22 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: