Burkholderia Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Burkholderia_mallei	6395	368	6027
Burkholderia_dolosa	858	50	808
Burkholderia_multivorans	582	26	556
Burkholderia_cenocepacia	528	34	494
Burkholderia_gladioli	287	16	271
Burkholderia_cepacia	287	13	274
Burkholderia_ubonensis	270	15	255
Burkholderia_orbicola	256	15	241
Burkholderia_contaminans	218	14	204
Burkholderia_vietnamiensis	201	14	187
Burkholderia_stagnalis	108	16	92

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Burkholderia_cenocepacia	N50	23000	nan
Burkholderia_cenocepacia	no_of_contigs	nan	730
Burkholderia_cenocepacia	GC_Content	66	68
Burkholderia_cenocepacia	Completeness	92	nan
Burkholderia_cenocepacia	Contamination	nan	5
Burkholderia_cenocepacia	Total_Coding_Sequences	6200	8200
Burkholderia_cenocepacia	Genome_Size	6.7e+06	8.8e+06
Burkholderia_gladioli	N50	60000	nan
Burkholderia_gladioli	no_of_contigs	nan	350
Burkholderia_gladioli	GC_Content	67	69
Burkholderia_gladioli	Completeness	91	nan
Burkholderia_gladioli	Contamination	nan	5
Burkholderia_gladioli	Total_Coding_Sequences	6600	8100
Burkholderia_gladioli	Genome_Size	7.6e+06	9.1e+06
Burkholderia_orbicola	N50	8000	nan
Burkholderia_orbicola	no_of_contigs	nan	1840
Burkholderia_orbicola	GC_Content	66	68
Burkholderia_orbicola	Completeness	99	nan
Burkholderia_orbicola	Contamination	nan	3
Burkholderia_orbicola	Total_Coding_Sequences	5700	8100

... and 57 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: