Bifidobacterium Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Bifidobacterium_adolescentis	2079	83	1996
Bifidobacterium_longum	1904	112	1792
Bifidobacterium_pseudocatenulatum	611	36	575
Bifidobacterium_animalis	398	32	366
Bifidobacterium_bifidum	246	9	237
Bifidobacterium_breve	217	24	193
Bifidobacterium_dentium	150	5	145

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Bifidobacterium_longum	N50	50000	nan
Bifidobacterium_longum	no_of_contigs	nan	170
Bifidobacterium_longum	GC_Content	59	61
Bifidobacterium_longum	Completeness	93	nan
Bifidobacterium_longum	Contamination	nan	3
Bifidobacterium_longum	Total_Coding_Sequences	1700	2700
Bifidobacterium_longum	Genome_Size	2.2e+06	2.9e+06
Bifidobacterium_breve	N50	11000	nan
Bifidobacterium_breve	no_of_contigs	nan	410
Bifidobacterium_breve	GC_Content	58	60
Bifidobacterium_breve	Completeness	94	nan
Bifidobacterium_breve	Contamination	nan	13
Bifidobacterium_breve	Total_Coding_Sequences	1800	2400
Bifidobacterium_breve	Genome_Size	2.2e+06	2.6e+06
Bifidobacterium_pseudocatenulatum	N50	58000	nan
Bifidobacterium_pseudocatenulatum	no_of_contigs	nan	90
Bifidobacterium_pseudocatenulatum	GC_Content	56	57
Bifidobacterium_pseudocatenulatum	Completeness	93	nan
Bifidobacterium_pseudocatenulatum	Contamination	nan	2
Bifidobacterium_pseudocatenulatum	Total_Coding_Sequences	1600	2300

... and 29 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: