Bacteroides Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Bacteroides_fragilis	1390	84	1306
Bacteroides_uniformis	1328	89	1239
Bacteroides_thetaiotaomicron	785	79	706
Bacteroides_ovatus	635	38	597
Bacteroides_xylanisolvens	424	36	388
Bacteroides_caccae	420	26	394
Bacteroides_cellulosilyticus	217	12	205
Bacteroides_stercoris	178	12	166

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Bacteroides_xylanisolvens	N50	16000	nan
Bacteroides_xylanisolvens	no_of_contigs	nan	980
Bacteroides_xylanisolvens	GC_Content	41	43
Bacteroides_xylanisolvens	Completeness	94	nan
Bacteroides_xylanisolvens	Contamination	nan	9
Bacteroides_xylanisolvens	Total_Coding_Sequences	4400	6000
Bacteroides_xylanisolvens	Genome_Size	5.6e+06	7e+06
Bacteroides_cellulosilyticus	N50	50000	nan
Bacteroides_cellulosilyticus	no_of_contigs	nan	500
Bacteroides_cellulosilyticus	GC_Content	42	44
Bacteroides_cellulosilyticus	Completeness	99	nan
Bacteroides_cellulosilyticus	Contamination	nan	4
Bacteroides_cellulosilyticus	Total_Coding_Sequences	4900	6100
Bacteroides_cellulosilyticus	Genome_Size	6.5e+06	7.7e+06
Bacteroides_fragilis	N50	22000	nan
Bacteroides_fragilis	no_of_contigs	nan	500
Bacteroides_fragilis	GC_Content	43	44
Bacteroides_fragilis	Completeness	97	nan
Bacteroides_fragilis	Contamination	nan	7
Bacteroides_fragilis	Total_Coding_Sequences	3900	5100

... and 36 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: