Aeromonas Overview¶

This page provides an overview of the genus, including links to species-specific pages and general information.

Genus Species Count Summary¶

Breakdown of genomes filtered and retained by using these metrics:

species	original_count	filtered_out_count	final_count
Aeromonas_caviae	830	34	796
Aeromonas_veronii	409	20	389
Aeromonas_salmonicida	315	11	304
Aeromonas_dhakensis	180	8	172
Aeromonas_hydrophila	174	8	166

📊 Download species counts table

Genus Summary Metrics¶

This section provides a summary of the metrics for the genus:

species	metric	lower_bounds	upper_bounds
Aeromonas_veronii	N50	32000	nan
Aeromonas_veronii	no_of_contigs	nan	540
Aeromonas_veronii	GC_Content	58	61
Aeromonas_veronii	Completeness	90	nan
Aeromonas_veronii	Contamination	nan	11
Aeromonas_veronii	Total_Coding_Sequences	3900	5000
Aeromonas_veronii	Genome_Size	4.3e+06	5.2e+06
Aeromonas_salmonicida	N50	25000	nan
Aeromonas_salmonicida	no_of_contigs	nan	490
Aeromonas_salmonicida	GC_Content	58	60
Aeromonas_salmonicida	Completeness	94	nan
Aeromonas_salmonicida	Contamination	nan	2
Aeromonas_salmonicida	Total_Coding_Sequences	4200	5000
Aeromonas_salmonicida	Genome_Size	4.3e+06	5.2e+06
Aeromonas_hydrophila	N50	27000	nan
Aeromonas_hydrophila	no_of_contigs	nan	500
Aeromonas_hydrophila	GC_Content	60	62
Aeromonas_hydrophila	Completeness	90	nan
Aeromonas_hydrophila	Contamination	nan	8
Aeromonas_hydrophila	Total_Coding_Sequences	4100	5400

... and 15 more rows

📊 Download genus summary metrics table

Genus Visualizations¶

These plots show the main summary visualizations for this genus, including distributions of key genomic metrics such as genome size, GC content, number of contigs, and other relevant statistics. The boxplot for each species is based on the distribution (i.e. median, q1, q3, min and max) of the filtered genomes. The red line is the lower threshold and the blue line is the upper threshold. Use these plots to compare and explore the diversity and characteristics of genomes within this genus: